PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0055s0046.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family FAR1
Protein Properties Length: 544aa    MW: 61777.6 Da    PI: 9.8418
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0055s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.62.6e-10351211090
                 FAR1  10 vGFsvrkskskks..krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           GF ++++++++   k++g i+   ++Cs+  ++ + + +    +++++r r +  +gC+ + ++++++  +w v   ++eHnH+l+
  Mapoly0055s0046.1.p  35 EGFVLTIKHTRRVgnKKDGDIKAVVLYCSCGAQQPRPQPQaeaeQQQRKRVRGSRGIGCTFNCTIRRQNGTEWAVFFDDKEHNHALF 121
                          59**99*999998889*************988776665555665666667788889*****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-835121IPR004330FAR1 DNA binding domain
PfamPF105511.6E-7267302IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MNNLNNLELL GELGERVFAT LDEARAAVDS QLQDEGFVLT IKHTRRVGNK KDGDIKAVVL  60
YCSCGAQQPR PQPQAEAEQQ QRKRVRGSRG IGCTFNCTIR RQNGTEWAVF FDDKEHNHAL  120
FADPSIHPQG RALTPAQRQE VIRLASDGLR PTRIVSTMRR QTVSLTPRDV YNLIQAERNR  180
NLASRSPLQA LLDNLERNKA EAPYFTQFDN QQRLTHLFIV SPSAKEVCSK FSARKIWLID  240
STYKTNRFGL LLMHVLVARV LEQFGVIPST FVTDRELALM NSLDNVFPDA DFLLCRWHIS  300
KNITAKHRLS FDSLEAFQEL LKQWNALVFS ITVACYEQQL EAMQEMFPLH VMTYLETTWL  360
VYKERFVACF LRGKLHFGHT TTSRVESAHS AMKKWISVST VMGKISIAGL KSAFQQFKLR  420
LENSGHACQG LFSSNLGHPC KHWFPPAIAA ELKIEDALGQ VHEEYNNASI YHQRVILDHI  480
ATLPTANVLT VLRGRGRPAR FLERPQRATS TSTQRNPSQF EVVEASVRPQ RRCGRCRQSG  540
HNA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6943060.0CU694306.7 H.parasitica DNA sequence from clone HpEmoy2-3N4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGCCA209481e-105(Albugo laibachii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-14FAR1-related sequence 5